Good work there. I was about to say that SidWizard has some kind of MIDI IN, but I guess that's not for sync'ing but just for entering notes (if even that?), but obviously it was precisely SidWizard that you had modified so you should know I guess. I am not aware of other C64 trackers that are sync'ed from an external clock. Dunno about Messiah though.. maybe that one can do that?
Other than that I guess the closest thing would be things like MIDI Slave and M64 (same name as your tracker?) that act as synth modules for external sequencers, but that do not contain any sequencers themselves.
It would be relatively easy to modify defMON — or any other C64 music editor really — in the same way that you have modified SidWizard, but I am not aware of anyone actually doing it, like you said.
(Otherwise defMON is typically acting as master. If you use the interface that scannerboy created, you can use defMON to send DIN sync and MIDI sync signals to external gear.)